PDBsum entry 1gpy Go to PDB code:  Tunnel analysis for: 1gpy calculated with MOLE 2.0 PDB id 1gpy Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.79 2.86 15.8 0.71 0.39 8.0 68 0 2 0 5 3 0 0   2 1.45 1.68 16.1 0.64 0.38 6.8 70 0 2 0 5 2 0 0   3 1.17 1.20 20.8 -0.97 0.02 25.4 70 4 2 0 2 4 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.