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PDBsum entry 1gpu
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Tunnel analysis for: 1gpu calculated with  MOLE 2.0
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PDB id
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1gpu
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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8 tunnels,
coloured by tunnel radius |
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9 tunnels,
coloured by
tunnel radius
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9 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.08 |
1.48 |
41.9 |
0.51 |
0.23 |
13.0 |
79 |
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5 |
2 |
1 |
6 |
3 |
0 |
0 |
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2 |
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1.97 |
1.97 |
30.9 |
-1.24 |
-0.16 |
23.1 |
88 |
7 |
3 |
3 |
3 |
1 |
1 |
0 |
CA 1681 A THD 1682 A
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3 |
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1.20 |
1.46 |
34.8 |
-1.11 |
-0.02 |
24.6 |
87 |
7 |
2 |
2 |
5 |
1 |
2 |
0 |
THD 1682 A
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4 |
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1.57 |
1.80 |
16.0 |
-1.65 |
-0.34 |
7.0 |
78 |
1 |
1 |
2 |
3 |
1 |
1 |
0 |
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5 |
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1.59 |
1.81 |
17.0 |
-1.69 |
-0.48 |
10.5 |
87 |
1 |
1 |
3 |
4 |
1 |
0 |
0 |
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6 |
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1.39 |
1.71 |
17.8 |
-1.53 |
-0.38 |
5.8 |
84 |
1 |
0 |
3 |
4 |
1 |
1 |
0 |
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7 |
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1.37 |
1.64 |
19.6 |
-1.68 |
-0.44 |
6.1 |
81 |
1 |
1 |
2 |
3 |
1 |
1 |
0 |
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8 |
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1.23 |
1.42 |
19.7 |
0.93 |
0.27 |
8.9 |
80 |
1 |
2 |
0 |
4 |
1 |
1 |
0 |
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9 |
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1.18 |
1.26 |
20.1 |
0.87 |
0.20 |
8.9 |
80 |
1 |
2 |
0 |
5 |
1 |
1 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program