PDBsum entry 1gc2

Pore analysis for: 1gc2 calculated with

MOLE 2.0

PDB id

1gc2

Pores calculated on whole structure

Pores calculated excluding ligands

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12 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.48

2.69

29.8

-1.02

-0.13

14.5

80

4

2

1

5

1

2

0

2

1.66

1.65

48.8

0.36

0.21

11.9

81

6

2

2

12

2

3

0

3

1.51

2.58

53.9

-0.29

0.05

15.2

81

7

4

3

12

2

3

0

4

1.66

1.82

56.3

0.00

-0.18

7.7

82

2

2

5

5

3

2

2

5

1.53

2.80

56.3

-0.40

0.01

15.5

82

9

4

3

12

1

3

0

6

1.67

3.02

57.1

0.24

0.18

10.9

79

4

2

2

12

3

3

0

7

1.70

1.88

59.5

0.07

0.15

12.2

81

6

2

2

12

2

3

0

8

1.60

2.33

60.0

-0.36

0.04

14.7

82

8

4

4

11

2

3

0

9

1.49

2.62

62.1

-0.20

0.16

17.3

81

9

4

4

15

2

3

0

10

1.66

1.67

65.3

0.13

0.25

14.6

81

6

2

3

15

3

3

0

11

1.67

1.69

97.7

0.08

0.08

11.7

81

5

4

5

14

3

4

0

12

1.70

1.79

46.7

-0.13

-0.30

7.5

82

2

2

4

6

2

2

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.