spacer
spacer

PDBsum entry 1ft5

Go to PDB code: 
Top Page protein ligands tunnels links
Tunnel analysis for: 1ft5 calculated with MOLE 2.0 PDB id
1ft5
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
0 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.45 1.45 21.1 -0.47 0.23 18.8 70 4 1 2 1 4 0 0  HEM 213 A HEM 215 A
2 1.44 1.44 22.8 0.01 0.39 18.6 71 5 1 1 2 4 0 1  HEM 213 A HEM 215 A
3 1.47 1.47 28.2 -0.53 0.22 25.8 73 5 2 1 2 4 0 0  HEM 213 A HEM 215 A
4 1.31 1.41 29.1 -0.69 0.29 17.6 73 6 0 3 2 4 0 1  HEM 213 A HEM 215 A PO4 218 A
5 1.49 3.47 36.7 0.96 0.66 12.6 75 6 1 0 5 5 0 2  HEM 214 A HEM 215 A HEM 216 A
6 1.51 3.58 40.2 0.74 0.37 9.1 76 7 0 2 4 4 0 3  HEM 215 A HEM 216 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer