PDBsum entry 1fro

Tunnel analysis for: 1fro calculated with

MOLE 2.0

PDB id

1fro

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

16 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.24

1.44

28.0

1.64

0.69

5.1

74

1

1

1

10

2

1

1

GSB 200 D

2

1.24

1.44

41.6

0.59

0.44

8.1

75

3

2

3

9

5

2

1

GSB 200 D

3

1.24

1.44

42.4

0.10

0.30

14.0

78

3

4

4

9

5

1

1

GSB 200 D

4

1.23

1.44

50.6

0.43

0.30

10.1

78

7

2

4

10

5

0

1

GSB 200 D

5

1.23

1.44

24.2

1.82

0.78

5.5

71

0

2

1

9

5

0

1

GSB 200 A

6

1.24

1.44

26.0

1.93

0.77

4.4

74

1

2

1

9

2

0

1

GSB 200 A

7

1.24

1.44

26.0

1.93

0.77

4.4

74

1

2

1

9

2

0

1

GSB 200 C

8

1.23

1.44

26.7

1.61

0.81

6.2

72

2

2

1

9

5

0

1

GSB 200 C

9

1.53

1.53

22.4

-2.33

-0.61

31.1

86

3

2

2

1

0

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.