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PDBsum entry 1fpv
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References listed in PDB file
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Key reference
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Title
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Structure determination of feline panleukopenia virus empty particles.
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Authors
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M.Agbandje,
R.Mckenna,
M.G.Rossmann,
M.L.Strassheim,
C.R.Parrish.
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Ref.
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Proteins, 1993,
16,
155-171.
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PubMed id
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Abstract
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Various crystal forms of the single-stranded DNA, feline panleukopenia virus
(FPV), a parvovirus, have been grown of both full virions and empty particles.
The structure of empty particles crystallized in an orthorhombic space group
P2(1)2(1)2(1), with unit cell dimensions a = 380.1 A, b = 379.3 A, and c = 350.9
A, has been determined to 3.3 A resolution. The data were collected using
oscillation photography with synchrotron radiation. The orientations of the
empty capsids in the unit cell were determined using a self-rotation function
and their positions were obtained with an R-factor search using canine
parvovirus (CPV) as a model. Phases were then calculated, based on the CPV
model, to 6.0 A resolution and gradually extended to 3.3 A resolution by
molecular replacement electron density averaging. The resultant electron density
was readily interpreted in terms of the known amino acid sequence. The structure
is contrasted to that of CPV in terms of host range, neutralization by
antibodies, hemagglutination properties, and binding of genomic DNA.
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Secondary reference #1
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Title
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Determination and refinement of the canine parvovirus empty-Capsid structure.
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Authors
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H.Wu,
W.Keller,
M.G.Rossmann.
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Ref.
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Acta Crystallogr D Biol Crystallogr, 1993,
49,
572-579.
[DOI no: ]
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PubMed id
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Note In the PDB file this reference is
annotated as "TO BE PUBLISHED".
The citation details given above were identified by an automated
search of PubMed on title and author
names, giving a
percentage match of
86%.
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Figure 4.
Fig. 4. Packing of icosahedral particles in the tetrahedral cell.
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Figure 6.
Fig. 6. Correlation coefficients (see Fig. 5 for definition) as a
function of resolution. Curve a: Averaging with the 'old' data
set between 15 and 3.5A resolution with a spherical mask.
Curve b: Averaging with the 'old' data set between 15 and 3.0 A
resolution with a molecular mask. Curve c: Averaging with the
'new' data set between 15 and 2.9 A resolution with the same
molecular mask as used in b.
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The above figures are
reproduced from the cited reference
with permission from the IUCr
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Secondary reference #2
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Title
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The canine parvovirus empty capsid structure.
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Authors
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H.Wu,
M.G.Rossmann.
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Ref.
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J Mol Biol, 1993,
233,
231-244.
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PubMed id
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Secondary reference #3
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Title
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Structure determination of monoclinic canine parvovirus.
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Authors
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J.Tsao,
M.S.Chapman,
H.Wu,
M.Agbandje,
W.Keller,
M.G.Rossmann.
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Ref.
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Acta Crystallogr B, 1992,
48,
75-88.
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PubMed id
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Secondary reference #4
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Title
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Mapping specific functions in the capsid structure of canine parvovirus and feline panleukopenia virus using infectious plasmid clones.
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Author
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C.R.Parrish.
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Ref.
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Virology, 1991,
183,
195-205.
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PubMed id
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Secondary reference #5
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Title
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The three-Dimensional structure of canine parvovirus and its functional implications.
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Authors
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J.Tsao,
M.S.Chapman,
M.Agbandje,
W.Keller,
K.Smith,
H.Wu,
M.Luo,
T.J.Smith,
M.G.Rossmann,
R.W.Compans.
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Ref.
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Science, 1991,
251,
1456-1464.
[DOI no: ]
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PubMed id
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Secondary reference #6
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Title
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Preliminary X-Ray crystallographic analysis of canine parvovirus crystals.
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Authors
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M.Luo,
J.Tsao,
M.G.Rossmann,
S.Basak,
R.W.Compans.
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Ref.
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J Mol Biol, 1988,
200,
209-211.
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PubMed id
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