PDBsum entry 1fpd Go to PDB code:  Tunnel analysis for: 1fpd calculated with MOLE 2.0 PDB id 1fpd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.31 1.66 19.3 -0.08 0.03 11.9 91 2 0 3 5 1 0 0   2 1.28 2.50 35.9 0.43 0.16 9.5 87 3 1 3 7 1 0 1   3 1.18 1.99 29.4 2.04 0.49 1.7 78 1 0 1 11 1 0 1   4 1.29 1.29 15.9 0.47 0.26 15.0 84 1 2 1 7 1 0 0   5 1.30 1.30 17.6 0.36 0.29 15.2 79 2 1 1 7 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.