PDBsum entry 1fj4 Go to PDB code:  Tunnel analysis for: 1fj4 calculated with MOLE 2.0 PDB id 1fj4 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   10 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.12 1.12 19.3 -0.89 -0.41 9.3 79 3 1 1 3 1 0 0   2 1.15 1.58 21.0 -0.18 -0.02 9.6 80 3 0 1 4 1 0 0   3 1.15 1.71 21.2 -0.36 -0.12 8.5 78 3 0 1 3 1 0 0   4 1.15 1.66 21.6 -0.40 -0.06 10.4 78 3 0 1 3 1 0 0   5 1.11 1.11 27.6 -1.19 -0.40 13.4 77 4 0 1 3 1 0 0   6 1.96 2.03 25.8 -0.71 -0.12 10.2 66 1 2 2 2 2 0 0   7 1.14 1.62 17.2 -0.48 -0.16 9.4 78 3 0 1 3 1 0 0   8 1.14 1.62 39.3 -0.76 -0.27 12.6 75 2 2 1 4 1 0 0   9 1.10 1.10 16.8 -1.08 -0.31 12.7 78 3 0 1 3 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.