PDBsum entry 1f4d Go to PDB code:  Tunnel analysis for: 1f4d calculated with MOLE 2.0 PDB id 1f4d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.40 2.38 28.3 0.15 0.33 10.6 70 2 1 2 5 5 0 0  TP2 402 B 2 1.39 2.39 30.5 -1.19 0.22 12.9 67 3 2 3 2 8 0 1  TP2 402 B GOL 502 B 3 1.30 1.31 35.6 -1.31 0.05 13.2 71 2 2 4 3 8 0 0  TP2 402 B 4 1.18 1.41 29.0 0.41 0.21 2.0 75 0 0 3 5 3 1 1  TP2 401 A 5 1.19 1.42 35.8 -1.08 -0.04 11.2 77 4 2 4 3 4 1 1  TP2 401 A GOL 501 A 6 1.25 1.50 15.5 -1.15 -0.29 22.6 86 2 3 2 2 2 0 0   7 1.36 1.58 19.5 -0.80 -0.28 10.4 69 1 1 1 3 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.