spacer
spacer

PDBsum entry 1f3v

Go to PDB code: 
Top Page protein Protein-protein interface(s) tunnels links
Tunnel analysis for: 1f3v calculated with MOLE 2.0 PDB id
1f3v
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
3 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.45 1.45 15.4 -1.09 -0.25 18.7 70 2 2 0 2 1 1 1  
2 1.44 1.44 17.6 -1.62 -0.38 23.8 72 3 3 0 2 1 1 1  
3 1.40 1.65 20.4 -1.73 -0.14 14.5 75 2 2 2 2 2 1 0  
4 1.34 1.34 16.1 1.37 0.15 1.9 58 0 0 0 3 2 0 1  MSE 478 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer