PDBsum entry 1f2d Go to PDB code:  Tunnel analysis for: 1f2d calculated with MOLE 2.0 PDB id 1f2d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.11 1.48 69.0 -0.18 -0.06 6.0 72 3 4 4 6 6 3 2  PLP 342 C SO4 942 C 2 1.23 1.53 96.7 -0.75 -0.23 9.8 75 3 7 8 8 7 6 2  PLP 342 B SO4 941 B 3 1.46 1.46 18.3 -0.98 -0.33 21.8 86 4 2 0 5 0 0 1   4 1.23 1.24 17.6 0.01 -0.18 6.9 85 0 1 2 5 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.