spacer
spacer

PDBsum entry 1ex2

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 1ex2 calculated with MOLE 2.0 PDB id
1ex2
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.17 1.16 23.1 -0.26 -0.23 13.9 81 3 2 2 5 0 0 0  PO4 202 B
2 1.45 1.57 15.9 -0.74 -0.61 14.0 81 1 2 1 2 1 0 0  
3 1.45 1.57 16.1 -0.98 -0.62 14.2 86 1 3 1 2 0 1 0  
4 1.64 1.64 24.2 -2.34 -0.81 23.7 85 3 3 4 0 0 1 0  PO4 203 A
5 1.63 1.63 26.8 -2.07 -0.82 18.8 88 4 4 5 1 0 1 0  PO4 203 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer