spacer
spacer

PDBsum entry 1efa

Go to PDB code: 
Top Page protein dna_rna ligands Protein-protein interface(s) pores links
Pore analysis for: 1efa calculated with MOLE 2.0 PDB id
1efa
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
2 pores, coloured by radius 2 pores, coloured by radius 2 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.18 3.51 35.0 -2.02 -0.66 13.8 88 4 0 9 4 0 0 0  
2 1.57 1.91 177.4 -1.74 -0.44 26.0 86 8 14 12 8 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer