PDBsum entry 1ef9 Go to PDB code:  Tunnel analysis for: 1ef9 calculated with MOLE 2.0 PDB id 1ef9 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.13 1.66 22.6 2.04 0.69 4.7 85 1 1 1 7 2 0 0   2 1.20 1.20 25.5 1.74 0.76 4.5 73 1 0 1 6 3 0 0  2CP 270 A 3 1.20 1.20 27.3 1.46 0.60 6.3 72 1 1 1 7 2 2 0   4 1.20 1.31 31.5 1.63 0.62 7.7 80 3 1 0 8 2 0 0  2CP 270 A 5 1.38 1.48 20.5 -1.33 -0.49 25.6 79 1 3 1 4 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.