PDBsum entry 1ed5 Go to PDB code:  Tunnel analysis for: 1ed5 calculated with MOLE 2.0 PDB id 1ed5 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 1.46 38.0 0.07 -0.11 7.9 73 1 1 2 6 4 1 1  HEM 2500 B ACT 2860 B GOL 2890 B 2 1.30 1.29 38.2 0.06 -0.11 8.2 71 1 1 2 5 4 1 1  HEM 1500 A ACT 1860 A 3 1.31 1.30 38.3 -0.99 -0.12 11.4 74 4 3 4 3 5 1 0  HEM 1500 A NRG 1705 A 4 1.25 1.45 38.5 -0.83 -0.16 11.1 76 4 3 4 3 4 1 0  HEM 2500 B NRG 2705 B GOL 2890 B 5 1.25 1.46 57.5 -0.53 -0.09 10.9 71 5 2 2 7 5 4 1  HEM 2500 B NRG 2705 B GOL 2890 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.