PDBsum entry 1e7c

Tunnel analysis for: 1e7c calculated with

MOLE 2.0

PDB id

1e7c

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.93

2.51

28.2

-0.18

0.15

21.4

74

5

3

1

7

2

0

0

HLT 4005 A HLT 4006 A

2

1.94

2.52

29.7

-0.27

0.12

23.4

74

7

3

1

7

3

0

0

HLT 4005 A HLT 4006 A

3

1.80

2.08

37.5

0.44

0.35

11.7

70

4

1

2

7

2

0

2

HLT 4005 A HLT 4006 A

4

1.99

2.68

37.9

-1.26

-0.08

26.2

76

7

4

1

8

1

0

0

HLT 4005 A HLT 4006 A

5

1.95

2.56

44.9

0.15

0.34

15.8

78

6

2

3

13

2

0

0

HLT 4005 A HLT 4006 A

6

1.58

2.27

48.2

0.10

0.29

16.6

77

8

4

1

11

2

1

0

MYR 1002 A HLT 4005 A HLT 4006 A

7

1.95

2.54

55.1

-0.55

0.16

21.0

78

7

3

4

13

2

1

0

MYR 1003 A MYR 1004 A HLT 4005 A HLT 4006 A

8

1.58

2.28

60.4

1.39

0.60

9.0

71

7

1

2

19

5

1

0

MYR 1002 A HLT 4005 A HLT 4006 A HLT 4007 A

9

1.20

1.20

21.7

-0.02

0.15

6.8

66

0

1

2

4

3

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.