PDBsum entry 1e04

Tunnel analysis for: 1e04 calculated with

MOLE 2.0

PDB id

1e04

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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without HETATM:

2 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.38

2.86

19.2

-0.17

0.09

12.2

71

2

2

2

2

3

1

0

2

1.37

2.85

25.5

-0.55

0.01

14.8

70

3

1

2

2

3

1

0

3

1.16

2.06

28.5

-0.21

-0.05

4.6

74

1

2

4

3

3

1

0

4

1.38

2.85

33.0

-1.04

-0.04

16.2

73

5

2

3

2

4

1

0

5

1.37

2.85

42.8

-0.66

-0.01

12.4

75

8

0

3

4

4

2

0

6

1.21

1.35

28.8

0.21

0.10

9.2

75

3

1

3

6

2

1

0

GOL 810 L

7

1.85

1.85

19.7

-0.94

-0.47

7.8

75

2

1

3

0

2

2

0

8

1.23

1.43

22.1

-0.50

-0.41

6.0

92

1

1

2

2

0

1

0

NAG 1 E NAG 2 E

9

1.14

1.56

15.5

2.32

0.75

3.4

89

0

1

0

8

0

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.