spacer
spacer

PDBsum entry 1dw3

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 1dw3 calculated with MOLE 2.0 PDB id
1dw3
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
0 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.34 1.34 24.2 1.46 0.82 8.2 63 2 0 1 6 2 0 3  HEC 113 B
2 1.33 1.33 26.4 0.49 0.46 16.4 65 3 2 0 6 2 0 2  HEC 113 B
3 1.33 1.33 26.7 0.87 0.77 13.3 64 4 0 0 6 2 0 2  HEC 113 B
4 1.19 1.62 21.7 1.49 1.00 10.5 59 2 0 0 5 3 0 0  HEC 113 A
5 1.15 1.66 24.3 1.00 0.61 12.0 60 3 1 0 5 4 0 1  HEC 113 A
6 1.18 1.62 30.0 -0.11 0.30 12.2 73 3 1 2 5 3 0 2  HEC 113 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer