spacer
spacer

PDBsum entry 1dss

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 1dss calculated with MOLE 2.0 PDB id
1dss
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
0 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.85 1.85 28.2 -1.12 -0.47 7.8 89 4 0 4 1 2 1 0  CCS 149 R NAD 335 R SO4 501 R SO4 502 R
2 1.43 1.51 28.7 -1.05 -0.38 7.5 90 3 0 4 3 2 1 0  CCS 149 G NAD 335 G SO4 501 G SO4 502 G
3 1.38 1.59 29.2 -1.09 -0.44 7.6 89 4 0 4 1 2 1 0  CCS 149 R NAD 335 R SO4 501 R SO4 502 R
4 1.14 1.13 37.4 -0.99 -0.33 9.1 88 2 1 4 3 2 1 0  CCS 149 G NAD 335 G SO4 501 G SO4 502 G

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer