PDBsum entry 1dpj Go to PDB code:  Tunnel analysis for: 1dpj calculated with MOLE 2.0 PDB id 1dpj Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.14 1.35 25.0 0.24 -0.01 12.2 87 2 2 3 6 2 0 0   2 1.15 1.34 25.6 0.39 -0.08 8.0 91 2 1 3 6 1 0 0   3 1.14 1.34 27.2 0.20 -0.17 6.7 92 1 2 3 6 1 0 0   4 1.19 1.40 32.2 0.69 0.47 6.0 66 1 2 0 7 5 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.