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PDBsum entry 1dmi
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Pore analysis for: 1dmi calculated with  MOLE 2.0
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PDB id
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1dmi
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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1 pore,
coloured by radius |
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5 pores,
coloured by radius
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5 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.03 |
2.07 |
33.1 |
-0.42 |
0.03 |
11.5 |
73 |
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1 |
3 |
4 |
5 |
5 |
0 |
1 |
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HEM 1500 A ITU 1800 A ACT 1850 A ACT 1860 A GOL
1880 A
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2 |
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1.32 |
1.59 |
49.3 |
-0.14 |
0.05 |
8.4 |
80 |
2 |
3 |
4 |
8 |
5 |
0 |
1 |
HEM 2500 B ITU 2800 B ACT 2850 B ACT 2860 B GOL
2880 B
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3 |
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1.16 |
1.38 |
64.3 |
-1.16 |
0.08 |
15.0 |
75 |
8 |
6 |
8 |
6 |
8 |
2 |
0 |
HEM 1500 A BHS 1610 A ACT 1850 A GOL 1880 A HEM
2500 B BHS 2610 B ACT 2850 B GOL 2880 B
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4 |
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1.16 |
1.38 |
68.1 |
-0.67 |
0.06 |
14.8 |
72 |
6 |
4 |
5 |
7 |
8 |
2 |
1 |
HEM 1500 A BHS 1610 A ACT 1860 A HEM 2500 B BHS
2610 B ACT 2850 B GOL 2880 B
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5 |
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1.16 |
1.39 |
72.4 |
0.42 |
0.12 |
8.3 |
73 |
2 |
2 |
2 |
12 |
8 |
2 |
2 |
HEM 1500 A BHS 1610 A ACT 1860 A HEM 2500 B BHS
2610 B ACT 2860 B
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program