PDBsum entry 1dm7 Go to PDB code:  Tunnel analysis for: 1dm7 calculated with MOLE 2.0 PDB id 1dm7 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.37 1.55 41.2 -0.60 -0.30 8.3 70 4 2 2 1 1 3 3   2 1.92 1.92 41.3 -0.69 0.11 9.8 71 3 2 4 6 4 2 3  HEM 1500 A HRG 1740 A 3 1.95 1.99 43.8 0.12 0.03 7.5 75 1 1 3 8 2 3 3  HEM 1500 A HRG 1740 A ACT 1860 A 4 1.33 1.54 51.6 -0.84 0.05 12.6 73 5 3 4 3 4 1 2  GOL 2880 A HEM 2500 B GOL 2890 B 5 1.36 1.54 51.8 -0.91 -0.27 10.3 70 4 3 4 2 2 4 3   6 1.35 1.54 54.4 -0.11 0.01 8.0 72 1 2 4 4 4 1 3  GOL 2880 A HEM 2500 B ACT 2860 B GOL 2890 B 7 1.40 1.40 17.6 0.03 -0.22 4.8 88 0 1 3 6 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.