PDBsum entry 1dk1 Go to PDB code:  Tunnel analysis for: 1dk1 calculated with MOLE 2.0 PDB id 1dk1 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 1 tunnel, coloured by tunnel radius 1 tunnel, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.40 1.47 19.4 -1.44 -0.74 6.9 82 1 0 2 1 0 0 0  A 19 B C 20 B U 42 B U 50 B C 53 B G 54 B C 55 B U 56 B MG 204 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.