PDBsum entry 1dii Go to PDB code:  Tunnel analysis for: 1dii calculated with MOLE 2.0 PDB id 1dii Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.18 2.70 87.4 -0.25 0.04 6.9 82 4 1 7 18 5 7 1  FAD 599 B 2 1.26 1.55 16.9 0.41 -0.12 8.8 73 0 1 1 4 3 2 0   3 1.12 1.55 16.3 0.66 0.00 8.5 76 0 1 1 4 2 2 0   4 1.13 1.56 17.4 0.62 -0.01 7.2 76 0 1 1 4 2 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.