spacer
spacer

PDBsum entry 1dfp

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 1dfp calculated with MOLE 2.0 PDB id
1dfp
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
2 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.23 1.41 17.4 -1.00 -0.56 12.4 93 2 0 3 1 1 0 0  DFP 501 B
2 1.21 1.40 21.6 -1.23 -0.62 15.2 93 2 2 4 1 1 0 0  DFP 501 B
3 1.36 1.39 15.1 0.12 -0.16 10.4 99 2 1 2 3 0 0 0  DFP 500 A
4 1.38 1.57 16.0 -1.02 -0.60 11.7 93 2 0 3 1 1 0 0  DFP 500 A
5 1.35 1.39 17.5 -0.41 -0.44 11.4 87 1 2 3 2 0 0 1  DFP 500 A
6 1.38 1.58 20.6 -0.69 -0.46 12.0 83 2 1 3 2 1 0 1  DFP 500 A
7 1.53 1.58 16.0 -2.65 -0.75 23.7 82 2 1 2 0 0 2 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer