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PDBsum entry 1dfh

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 1dfh calculated with MOLE 2.0 PDB id
1dfh
Pores calculated on whole structure Pores calculated excluding ligands

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2 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.36 1.48 26.3 0.76 -0.10 3.8 90 1 1 3 5 1 0 0  TDB 0 A NAD 501 A
2 1.32 1.52 26.4 -0.26 -0.45 6.6 84 3 0 3 3 2 0 0  TDB 0 A NAD 501 A
3 1.31 2.71 26.9 1.62 0.76 3.0 83 0 1 0 7 3 0 0  TDB 0 A NAD 501 A
4 1.31 2.61 30.4 0.74 0.52 6.5 83 2 0 1 5 3 0 0  TDB 0 A NAD 501 A
5 1.50 2.40 67.2 -2.21 -0.39 32.6 85 4 5 3 3 1 0 0  TDB 0 B NAD 501 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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