PDBsum entry 1de9 Go to PDB code:  Tunnel analysis for: 1de9 calculated with MOLE 2.0 PDB id 1de9 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.35 1.39 20.9 -1.91 -0.22 23.0 71 1 2 0 0 3 0 0  DC 2 U DT 3 U DA 4 U DC 5 U DG 18 W DT 19 W DA 20 W DG 21 W 2 1.39 1.39 23.5 -1.08 -0.56 6.1 91 1 0 3 2 0 0 0  3DR 6 V DG 7 V DA 8 V DG 13 W DA 14 W 3 1.65 1.65 24.4 -1.48 -0.54 16.9 86 1 1 1 0 1 0 0  DT 3 U DA 4 U DC 5 U 3DR 6 V DG 7 V DT 15 W DC 16 W DG 17 W DG 18 W 4 1.38 1.38 24.5 -0.83 -0.46 8.3 89 2 0 2 3 0 0 0  DA 4 U DC 5 U 3DR 6 V DG 7 V 5 1.48 1.48 34.4 -1.69 -0.59 13.9 88 2 1 2 1 1 0 0  DC 5 U 3DR 6 V DG 7 V DA 8 V DG 13 W DG 18 W 6 1.60 1.60 20.8 -0.50 -0.40 5.6 77 2 0 3 2 2 0 0  3DR 6 Y DG 7 Y DG 13 Z DA 14 Z 7 1.30 1.30 20.9 -0.36 -0.31 5.2 77 1 0 2 3 2 0 0  DT 3 X DA 4 X DC 5 X 3DR 6 Y DG 7 Y 8 1.27 1.27 22.3 -0.38 -0.34 5.3 78 2 0 2 3 2 0 0  DA 4 X DC 5 X 3DR 6 Y DG 7 Y Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.