spacer
spacer

PDBsum entry 1dc3

Go to PDB code: 
Top Page protein Protein-protein interface(s) tunnels links
Tunnel analysis for: 1dc3 calculated with MOLE 2.0 PDB id
1dc3
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
2 tunnels, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.38 1.38 18.2 0.20 -0.15 10.4 100 1 1 2 3 0 0 0  
2 1.40 1.39 21.6 -0.38 -0.19 11.8 91 2 1 3 2 0 1 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer