PDBsum entry 1dbm Go to PDB code:  Tunnel analysis for: 1dbm calculated with MOLE 2.0 PDB id 1dbm Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.34 1.48 15.7 -1.33 -0.56 5.6 103 1 0 4 1 0 0 0   2 1.34 1.49 16.6 -1.41 -0.58 10.4 95 2 0 4 1 0 1 0   3 1.38 1.38 18.1 -1.01 -0.22 15.8 64 2 1 0 1 3 1 0   4 1.35 1.53 22.4 -1.85 -0.69 18.3 99 2 2 4 0 0 0 0   5 1.42 1.54 24.6 -0.95 -0.60 7.2 102 2 0 4 2 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.