PDBsum entry 1dbf Go to PDB code:  Tunnel analysis for: 1dbf calculated with MOLE 2.0 PDB id 1dbf Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.24 1.87 36.3 1.54 0.37 7.3 82 1 1 0 11 0 0 0   2 1.11 1.30 16.1 1.57 0.30 6.4 78 1 1 0 10 0 0 0   3 1.26 1.46 17.9 1.58 0.31 6.1 80 1 1 0 9 0 0 0  GOL 254 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.