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PDBsum entry 1d8f
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Tunnel analysis for: 1d8f calculated with  MOLE 2.0
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PDB id
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1d8f
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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4 tunnels,
coloured by tunnel radius |
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6 tunnels,
coloured by
tunnel radius
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6 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.35 |
1.47 |
16.9 |
-0.41 |
0.04 |
20.9 |
94 |
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3 |
2 |
1 |
3 |
0 |
0 |
0 |
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2 |
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1.31 |
1.51 |
19.2 |
-1.30 |
-0.33 |
18.3 |
82 |
1 |
2 |
3 |
2 |
2 |
1 |
0 |
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3 |
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1.32 |
1.54 |
21.6 |
-0.30 |
0.00 |
15.1 |
91 |
4 |
3 |
3 |
3 |
1 |
0 |
0 |
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4 |
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1.34 |
1.46 |
26.1 |
-1.37 |
-0.40 |
20.4 |
95 |
5 |
3 |
4 |
5 |
0 |
0 |
0 |
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5 |
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1.32 |
1.54 |
26.8 |
-1.12 |
-0.37 |
16.6 |
91 |
4 |
4 |
3 |
7 |
1 |
0 |
0 |
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6 |
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2.12 |
2.20 |
17.6 |
0.18 |
0.24 |
14.9 |
74 |
3 |
1 |
1 |
4 |
2 |
0 |
0 |
SPI 901 B
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program