PDBsum entry 1d7f Go to PDB code:  Tunnel analysis for: 1d7f calculated with MOLE 2.0 PDB id 1d7f Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.14 2.47 75.2 -0.71 -0.13 20.4 87 5 7 6 10 3 0 0   2 1.20 3.12 21.3 -2.32 -0.12 20.0 82 3 1 4 1 3 1 0   3 1.21 3.14 21.7 -2.26 -0.27 18.8 82 3 1 3 1 3 1 0   4 1.20 2.97 18.9 -2.31 -0.34 19.8 79 3 1 3 0 3 1 0   5 1.00 1.15 17.2 -1.04 -0.31 18.3 84 1 1 2 1 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.