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PDBsum entry 1d66

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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 1d66 calculated with MOLE 2.0 PDB id
1d66
Pores calculated on whole structure Pores calculated excluding ligands

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2 pores, coloured by radius 2 pores, coloured by radius 2 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.90 1.90 30.0 -0.19 -0.62 6.5 61 0 1 0 2 0 0 0  DG 6 D DG 7 D DA 8 D DC 9 D DA 10 D DG 11 D DT 12
D DC 13 D DT 29 E DG 30 E DT 31 E DC 32 E DC 33 E
DC 35 E
2 1.28 1.48 28.8 -1.87 -0.48 24.3 85 6 1 2 2 0 0 0  DG 3 D DG 4 D DC 32 E

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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