PDBsum entry 1d4f Go to PDB code:  Pore analysis for: 1d4f calculated with MOLE 2.0 PDB id 1d4f Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   10 pores, coloured by radius 17 pores, coloured by radius 17 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.83 1.95 25.2 -1.28 -0.07 12.7 85 2 1 1 2 2 1 0   2 1.88 2.00 30.7 -1.10 -0.44 20.3 86 6 4 2 6 1 0 0   3 1.64 4.04 34.7 -0.19 0.04 11.3 82 5 1 2 6 2 0 1  NAD 501 A 4 1.65 3.67 39.5 -0.48 0.04 12.8 82 4 2 1 7 2 1 1  NAD 501 A 5 1.24 1.51 58.1 -1.41 -0.19 19.1 79 7 5 3 4 4 2 0   6 1.26 1.52 69.9 -1.18 -0.19 16.6 78 6 4 2 6 4 1 0  NAD 502 B 7 1.93 2.10 70.4 -1.32 -0.07 21.1 76 5 2 1 4 5 2 0  NAD 504 D 8 1.94 2.10 77.7 -1.46 -0.35 23.2 85 9 5 2 4 2 0 0  NAD 504 D 9 1.64 1.86 81.4 -1.68 -0.21 25.6 82 11 9 3 8 2 1 0   10 1.21 1.50 102.3 -1.91 -0.39 21.0 79 12 8 8 7 4 1 0  NAD 504 D 11 1.27 1.51 109.2 -1.85 -0.39 19.8 78 11 6 8 7 4 0 0  NAD 502 B NAD 504 D 12 1.59 1.78 111.8 -1.89 -0.42 26.7 82 13 9 4 7 2 1 0   13 1.57 1.74 111.1 -1.57 -0.39 22.6 82 11 6 3 6 2 0 0  NAD 503 C 14 1.58 1.78 114.8 -1.81 -0.30 24.2 83 12 8 5 8 2 1 0   15 1.87 1.99 126.9 -1.40 -0.30 21.6 82 16 9 5 13 4 1 0  NAD 503 C 16 1.96 1.91 137.1 -1.01 -0.16 18.7 82 15 7 1 12 4 2 0  NAD 502 B NAD 503 C 17 1.87 2.09 154.0 -1.51 -0.23 22.4 82 18 8 6 14 4 1 0  NAD 503 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.