PDBsum entry 1d3b Go to PDB code:  Pore analysis for: 1d3b calculated with MOLE 2.0 PDB id 1d3b Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   11 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.10 1.27 32.6 -0.94 0.04 22.3 83 8 2 1 5 1 0 0   2 3.06 4.87 38.0 -2.78 -0.51 33.4 85 9 4 3 1 0 0 1  CIT 701 G 3 3.11 4.85 37.9 -3.12 -0.56 36.9 82 10 4 2 0 0 0 1  GOL 613 F CIT 701 G CIT 703 I 4 1.18 1.20 40.3 -2.14 -0.42 30.6 82 10 2 0 2 1 0 0   5 1.20 1.20 46.7 -2.39 -0.31 34.4 82 11 2 0 3 1 0 0  GOL 606 C 6 2.95 4.73 61.3 -2.26 -0.42 32.4 81 13 5 3 1 0 0 3  GOL 606 C 7 1.82 3.66 64.0 -1.10 -0.34 21.9 90 7 5 1 8 1 0 0  GOL 612 E 8 2.95 4.73 65.6 -2.61 -0.49 34.6 82 13 5 4 0 0 0 3  GOL 606 C 9 1.86 3.72 70.3 -1.66 -0.30 27.6 89 12 5 0 7 1 0 0  GOL 612 E 10 1.83 3.65 71.3 -1.77 -0.27 28.8 88 14 4 0 7 1 0 0  GOL 606 C GOL 612 E 11 2.73 3.17 81.9 -2.39 -0.51 32.5 83 14 7 5 2 0 0 3  GOL 612 E 12 1.78 3.21 105.2 -1.80 -0.41 27.7 86 16 8 4 6 1 0 3  GOL 612 E Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.