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PDBsum entry 1cf6

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Top Page protein dna_rna ligands metals pores links
Pore analysis for: 1cf6 calculated with MOLE 2.0 PDB id
1cf6
Pores calculated on whole structure Pores calculated excluding ligands

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4 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.86 1.86 31.0 -1.27 -0.26 18.3 88 5 1 2 2 0 0 0  A 4 C
2 1.86 1.86 33.3 -2.07 -0.29 25.9 82 7 2 2 2 1 0 0  UCP 338 B A 4 C C 7 D
3 1.45 1.46 112.7 -1.88 -0.37 22.7 85 7 3 4 2 1 0 0  UCP 338 B A 4 C G 5 C G 6 C G 8 C T 9 C C 10 C G
11 C A 3 D C 4 D G 5 D C 6 D C 7 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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