PDBsum entry 1cd3 Go to PDB code:  Pore analysis for: 1cd3 calculated with MOLE 2.0 PDB id 1cd3 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   12 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.35 1.54 38.7 -0.78 -0.20 11.6 80 4 2 2 5 2 2 0   2 1.26 1.53 66.7 -1.31 -0.53 14.0 85 4 5 6 7 1 1 0   3 1.27 1.55 72.0 -1.51 -0.41 18.1 85 5 3 5 5 1 1 0   4 2.55 2.56 72.6 -1.94 -0.73 21.5 82 5 11 6 4 1 2 0   5 2.55 2.55 74.2 -2.29 -0.70 25.6 81 6 10 5 3 1 2 0   6 2.33 2.31 96.7 -1.89 -0.52 24.4 77 7 7 0 3 1 5 0   7 1.77 1.92 104.7 -1.23 -0.40 15.0 87 8 10 10 11 1 4 0   8 1.36 1.50 111.5 -1.98 -0.56 21.9 78 8 7 2 4 1 5 0   9 1.39 1.44 114.6 -1.12 -0.45 12.5 87 8 9 12 12 1 4 0   10 1.12 1.32 119.2 -1.38 -0.25 18.2 81 6 7 5 5 5 1 0   11 1.20 1.19 154.7 -1.18 -0.41 14.4 87 10 9 14 11 3 3 0   12 1.18 1.37 151.1 -1.93 -0.43 25.1 80 9 14 7 5 4 3 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.