spacer
spacer

PDBsum entry 1bnc

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 1bnc calculated with MOLE 2.0 PDB id
1bnc
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
10 pores, coloured by radius 11 pores, coloured by radius 11 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.36 1.78 30.7 -0.01 0.06 13.6 76 4 1 0 7 3 0 0  
2 1.20 2.36 32.3 -1.38 -0.18 18.6 81 4 3 4 3 2 1 0  PO4 954 B
3 1.37 1.81 35.8 -0.05 0.04 13.5 76 4 1 0 7 3 0 0  
4 1.49 1.93 37.0 -0.92 -0.06 20.2 73 6 2 0 8 2 0 0  
5 1.11 3.58 60.1 -0.53 -0.06 14.7 78 6 2 4 8 3 4 0  PO4 953 A
6 1.93 2.14 61.3 -0.42 0.05 15.7 86 4 2 1 7 1 0 0  
7 1.12 3.50 69.5 -1.36 -0.10 24.4 81 10 3 5 7 1 1 0  PO4 953 A
8 1.40 1.40 71.8 -1.40 -0.27 22.6 83 8 5 4 5 2 2 0  
9 1.22 1.25 107.4 -1.56 -0.31 17.1 77 10 4 3 4 4 1 0  
10 1.23 1.23 109.4 -1.40 -0.31 15.3 78 10 4 3 5 4 1 0  
11 1.23 1.25 114.1 -0.93 -0.24 11.2 79 8 3 3 6 6 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer