PDBsum entry 1bjf Go to PDB code:  Tunnel analysis for: 1bjf calculated with MOLE 2.0 PDB id 1bjf Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.37 1.76 34.6 0.10 -0.20 9.0 75 3 1 2 5 3 0 0   2 1.38 1.74 35.0 0.06 -0.21 9.5 76 3 2 2 5 3 0 0   3 1.60 1.74 15.2 1.99 0.74 0.7 70 0 0 1 3 5 0 1   4 1.58 1.65 17.6 2.31 1.04 1.9 62 0 1 0 3 6 0 0   5 1.52 1.60 18.6 2.25 1.08 2.1 62 0 1 0 3 6 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.