PDBsum entry 1bf5 Go to PDB code:  Tunnel analysis for: 1bf5 calculated with MOLE 2.0 PDB id 1bf5 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.39 25.7 0.70 -0.07 2.0 76 0 0 0 5 1 1 0  DC 1008 B DC 1009 B DA 2014 C DA 2015 C 2 1.20 1.38 26.9 0.14 -0.12 5.5 79 2 0 1 5 1 1 0  DC 1008 B DC 1009 B DA 2015 C DC 2016 C 3 1.47 2.71 19.3 1.48 0.59 3.7 71 1 0 3 7 1 0 0   4 1.33 4.34 20.4 0.40 0.24 7.3 70 2 1 3 7 1 1 0   5 1.27 1.62 17.4 -0.61 -0.23 9.0 77 1 1 2 2 1 2 0   6 1.29 2.32 16.4 -0.37 0.49 7.8 62 1 1 1 2 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.