spacer
spacer

PDBsum entry 1be3

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 1be3 calculated with MOLE 2.0 PDB id
1be3
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
22 pores, coloured by radius 22 pores, coloured by radius 22 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.61 2.79 27.9 1.41 0.38 11.8 74 1 2 0 7 0 0 0  
2 1.38 1.68 31.6 0.28 0.31 15.7 74 2 2 0 5 2 1 0  
3 1.96 3.45 33.3 -0.24 0.49 12.7 84 3 1 2 8 3 0 0  
4 1.39 1.55 38.2 -0.85 -0.18 16.8 76 5 3 1 5 3 1 0  HEM 380 C
5 1.39 1.67 45.1 0.90 0.29 11.3 78 2 3 1 11 2 0 0  
6 1.47 1.48 46.0 -1.32 -0.28 20.9 71 6 5 2 2 4 2 0  
7 1.96 2.67 49.5 -0.89 -0.19 22.1 77 4 6 0 4 1 1 0  
8 1.28 1.77 57.1 -1.63 -0.27 23.3 77 7 3 2 2 4 2 1  
9 1.29 1.39 59.1 -1.70 -0.42 20.2 87 7 2 7 5 0 2 0  
10 1.17 1.69 73.8 -0.62 -0.03 15.7 83 4 4 6 11 3 1 0  
11 1.29 1.30 89.1 0.21 0.49 8.6 72 5 2 4 14 10 0 1  HEM 381 C
12 1.71 1.76 96.9 -1.32 -0.11 19.6 78 8 9 6 7 5 5 0  HEC 242 D
13 2.31 2.43 97.2 -0.37 0.32 13.9 73 8 1 4 12 8 1 1  
14 1.97 2.68 101.2 -1.68 -0.17 21.6 78 9 9 6 6 5 5 0  HEC 242 D
15 1.38 1.37 114.2 -1.18 -0.48 18.4 84 5 4 4 5 1 1 0  
16 1.20 1.67 128.6 -1.15 -0.15 16.3 84 8 6 13 13 3 5 0  
17 1.54 2.10 131.1 -1.45 -0.15 18.7 78 12 5 6 7 6 2 0  
18 1.22 1.54 130.1 -0.89 -0.44 13.9 83 2 8 8 6 1 5 2  HEC 242 D
19 1.24 1.71 151.6 -0.81 -0.34 15.8 83 5 14 9 10 2 4 2  HEC 242 D
20 1.72 2.82 159.2 -1.36 -0.26 20.3 81 8 9 8 10 5 3 0  
21 1.37 1.37 163.2 -1.38 -0.27 21.3 80 12 7 6 8 5 2 0  
22 1.23 1.95 181.1 -0.73 0.13 16.4 77 15 10 7 23 12 5 0  HEC 242 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer