PDBsum entry 1bdh Go to PDB code:  Tunnel analysis for: 1bdh calculated with MOLE 2.0 PDB id 1bdh Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.26 1.26 25.5 -0.86 -0.31 15.6 78 2 3 2 4 3 0 0   2 1.39 1.93 30.0 0.47 0.21 10.4 81 0 4 2 5 3 1 0  HPA 599 A 3 1.39 1.94 32.2 -0.63 0.06 14.5 82 1 4 4 3 4 0 0  HPA 599 A 4 1.24 1.42 16.1 0.37 0.31 11.4 79 2 1 0 4 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.