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PDBsum entry 1bcf

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 1bcf calculated with MOLE 2.0 PDB id
1bcf
Pores calculated on whole structure Pores calculated excluding ligands

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6 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.25 1.26 50.0 -3.49 -0.90 42.6 85 3 10 1 0 0 0 0  
2 1.25 1.23 91.0 -2.93 -0.64 39.3 81 8 14 1 1 1 0 0  
3 1.18 1.50 117.7 -2.49 -0.44 31.9 80 14 12 3 6 2 0 0  
4 1.22 1.56 124.6 -2.51 -0.46 33.8 80 13 13 2 5 3 0 0  
5 1.20 1.61 167.3 -2.53 -0.34 32.0 81 20 17 4 6 4 0 0  HEM 200 A
6 1.20 1.42 173.4 -2.44 -0.32 34.3 81 18 17 2 6 3 0 0  HEM 200 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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