spacer
spacer

PDBsum entry 1b6b

Go to PDB code: 
Top Page protein Protein-protein interface(s) tunnels links
Tunnel analysis for: 1b6b calculated with MOLE 2.0 PDB id
1b6b
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.39 2.50 24.3 0.81 0.16 4.2 68 0 1 1 7 2 0 0  
2 2.26 2.26 15.1 -2.35 -0.50 26.3 87 5 1 2 1 0 0 0  
3 1.18 2.10 17.0 0.96 0.01 6.3 78 0 1 0 6 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer