PDBsum entry 1b5d Go to PDB code:  Tunnel analysis for: 1b5d calculated with MOLE 2.0 PDB id 1b5d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.33 1.48 23.6 -0.45 0.25 9.3 74 0 4 2 5 5 0 0   2 1.31 2.50 28.8 -1.08 0.18 13.8 71 1 2 3 3 7 0 0  DCM 300 A 3 1.28 2.15 28.9 -1.03 0.22 15.0 73 1 3 3 4 6 0 1  DCM 300 A 4 1.29 1.54 18.7 -0.58 0.26 9.2 70 0 2 2 4 5 0 0   5 1.29 1.54 27.1 -1.14 0.16 13.0 70 1 2 3 3 7 1 0  DCM 400 B 6 1.25 2.33 27.8 -1.21 0.17 15.1 72 1 3 3 3 6 0 1  DCM 400 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.