PDBsum entry 1awh

Tunnel analysis for: 1awh calculated with

MOLE 2.0

PDB id

1awh

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

8 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.22

1.22

16.0

-0.80

-0.51

13.1

64

1

2

2

1

0

1

1

2

1.45

1.45

16.2

-0.34

-0.26

12.0

70

1

4

0

2

1

2

1

3

1.26

1.72

21.8

-0.09

-0.15

11.3

77

1

4

2

3

3

2

1

4

1.16

1.67

25.1

-0.23

0.11

11.1

79

3

0

1

5

3

0

0

5

1.18

1.37

22.5

0.03

0.12

10.9

81

3

1

1

7

3

0

0

6

1.19

1.37

24.6

0.26

0.10

10.1

83

3

1

1

7

2

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.