PDBsum entry 1aql Go to PDB code:  Tunnel analysis for: 1aql calculated with MOLE 2.0 PDB id 1aql Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.26 1.26 38.2 1.96 0.82 1.3 73 1 0 2 9 5 1 0  TCH 601 A 2 1.25 1.26 39.3 1.61 0.59 2.9 70 2 0 2 7 5 0 0  TCH 601 A 3 1.28 1.26 47.7 0.83 0.29 3.1 78 1 1 5 10 6 1 0  TCH 601 B 4 1.27 1.26 48.8 0.76 0.32 5.3 73 3 1 3 9 6 0 0  TCH 601 B 5 1.28 1.28 49.9 1.23 0.48 3.6 72 2 0 3 11 8 0 0  TCH 601 A TCH 601 B 6 1.28 1.26 50.9 0.00 0.13 8.5 78 4 1 4 8 6 0 0  TCH 601 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.