PDBsum entry 1apl Go to PDB code:  Tunnel analysis for: 1apl calculated with MOLE 2.0 PDB id 1apl Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.16 17.6 1.15 0.52 4.9 66 1 1 1 3 2 0 0  DT 36 B DT 37 B 2 1.25 1.33 19.4 -0.73 -0.02 18.6 90 2 0 2 3 0 0 0  DA 1 A DC 2 A DT 41 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.