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PDBsum entry 1amu
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Tunnel analysis for: 1amu calculated with  MOLE 2.0
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PDB id
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1amu
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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3 tunnels,
coloured by tunnel radius |
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6 tunnels,
coloured by
tunnel radius
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6 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.14 |
1.77 |
30.9 |
-0.07 |
0.28 |
11.8 |
77 |
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2 |
3 |
2 |
5 |
3 |
1 |
0 |
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2 |
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1.11 |
1.97 |
36.5 |
-0.60 |
0.02 |
13.1 |
85 |
3 |
2 |
5 |
5 |
3 |
1 |
0 |
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3 |
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1.14 |
1.76 |
71.0 |
-0.26 |
0.01 |
12.0 |
82 |
5 |
4 |
4 |
8 |
5 |
3 |
0 |
MG 564 B PHE 566 B AMP 567 B
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4 |
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1.41 |
1.68 |
20.7 |
0.66 |
0.55 |
3.1 |
62 |
1 |
0 |
1 |
3 |
4 |
0 |
0 |
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5 |
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1.24 |
1.28 |
23.2 |
2.40 |
1.04 |
2.5 |
76 |
1 |
0 |
0 |
9 |
4 |
0 |
0 |
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6 |
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1.16 |
2.58 |
18.8 |
2.05 |
0.81 |
4.1 |
76 |
1 |
0 |
0 |
7 |
2 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program