PDBsum entry 1ajq

Tunnel analysis for: 1ajq calculated with

MOLE 2.0

PDB id

1ajq

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.28

1.27

19.1

0.09

-0.17

4.2

86

0

1

3

2

1

0

0

2

1.12

1.33

19.9

-1.27

-0.39

11.5

78

1

2

4

3

1

0

0

3

1.31

1.52

25.0

-0.86

-0.10

6.3

82

1

1

5

2

2

1

0

4

1.60

1.64

19.6

-0.52

-0.42

7.4

77

3

0

1

4

2

0

0

5

1.44

1.44

20.1

-0.33

-0.20

10.0

67

3

1

0

3

2

1

0

6

1.47

1.55

24.7

-0.41

0.04

14.3

69

3

3

1

3

3

2

0

7

1.41

2.34

32.1

-0.81

-0.08

9.0

67

4

1

1

5

5

3

0

8

1.35

2.61

20.1

-1.25

-0.24

10.4

70

1

2

2

2

2

2

0

9

1.50

1.55

20.5

-0.48

-0.20

4.3

62

0

1

2

1

2

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.